_ 1300796138119 affyAllExonSuper hide affyTxnPhase3Super hide bdtnpChipper hide bdtnpDnase hide blastDm2FB dense blastDm2FB pack c chr17 chromName chr17 clade mammal command start cons30wayViewalign.align.anoCar1 0 cons30wayViewalign.align.bosTau3 0 cons30wayViewalign.align.calJac1 0 cons30wayViewalign.align.cavPor2 0 cons30wayViewalign.align.danRer5 0 cons30wayViewalign.align.dasNov1 0 cons30wayViewalign.align.echTel1 0 cons30wayViewalign.align.eriEur1 0 cons30wayViewalign.align.felCat3 0 cons30wayViewalign.align.fr2 0 cons30wayViewalign.align.loxAfr1 0 cons30wayViewalign.align.mafChain 1 cons30wayViewalign.align.ornAna1 0 cons30wayViewalign.align.oryCun1 0 cons30wayViewalign.align.oryLat1 0 cons30wayViewalign.align.otoGar1 0 cons30wayViewalign.align.panTro2 0 cons30wayViewalign.align.rheMac2 0 cons30wayViewalign.align.sorAra1 0 cons30wayViewalign.align.tetNig1 0 cons30wayViewalign.align.tupBel1 0 cons30wayViewalign.align.xenTro2 0 cons44wayViewalign.align.bosTau4 0 cons44wayViewalign.align.calJac1 0 cons44wayViewalign.align.cavPor3 0 cons44wayViewalign.align.choHof1 0 cons44wayViewalign.align.danRer5 0 cons44wayViewalign.align.dasNov2 0 cons44wayViewalign.align.dipOrd1 0 cons44wayViewalign.align.echTel1 0 cons44wayViewalign.align.equCab2 0 cons44wayViewalign.align.eriEur1 0 cons44wayViewalign.align.felCat3 0 cons44wayViewalign.align.fr2 0 cons44wayViewalign.align.gorGor1 0 cons44wayViewalign.align.mafChain 1 cons44wayViewalign.align.micMur1 0 cons44wayViewalign.align.myoLuc1 0 cons44wayViewalign.align.ochPri2 0 cons44wayViewalign.align.oryCun1 0 cons44wayViewalign.align.oryLat2 0 cons44wayViewalign.align.otoGar1 0 cons44wayViewalign.align.panTro2 0 cons44wayViewalign.align.petMar1 0 cons44wayViewalign.align.ponAbe2 0 cons44wayViewalign.align.proCap1 0 cons44wayViewalign.align.pteVam1 0 cons44wayViewalign.align.rn4 0 cons44wayViewalign.align.sorAra1 0 cons44wayViewalign.align.speTri1 0 cons44wayViewalign.align.taeGut1 0 cons44wayViewalign.align.tarSyr1 0 cons44wayViewalign.align.tetNig1 0 cons44wayViewalign.align.tupBel1 0 cons44wayViewalign.align.turTru1 0 cons44wayViewalign.align.vicPac1 0 cons46way pack cons46wayViewalign.align.anoCar1 0 cons46wayViewalign.align.bosTau4 0 cons46wayViewalign.align.calJac1 0 cons46wayViewalign.align.cavPor3 0 cons46wayViewalign.align.choHof1 0 cons46wayViewalign.align.dasNov2 0 cons46wayViewalign.align.dipOrd1 0 cons46wayViewalign.align.echTel1 0 cons46wayViewalign.align.equCab2 0 cons46wayViewalign.align.eriEur1 0 cons46wayViewalign.align.felCat3 0 cons46wayViewalign.align.fr2 0 cons46wayViewalign.align.gasAcu1 0 cons46wayViewalign.align.gorGor1 0 cons46wayViewalign.align.macEug1 0 cons46wayViewalign.align.mafChain 1 cons46wayViewalign.align.micMur1 0 cons46wayViewalign.align.myoLuc1 0 cons46wayViewalign.align.ochPri2 0 cons46wayViewalign.align.ornAna1 0 cons46wayViewalign.align.oryCun2 0 cons46wayViewalign.align.oryLat2 0 cons46wayViewalign.align.otoGar1 0 cons46wayViewalign.align.panTro2 0 cons46wayViewalign.align.papHam1 0 cons46wayViewalign.align.petMar1 0 cons46wayViewalign.align.ponAbe2 0 cons46wayViewalign.align.proCap1 0 cons46wayViewalign.align.pteVam1 0 cons46wayViewalign.align.rn4 0 cons46wayViewalign.align.sorAra1 0 cons46wayViewalign.align.speTri1 0 cons46wayViewalign.align.taeGut1 0 cons46wayViewalign.align.tarSyr1 0 cons46wayViewalign.align.tetNig2 0 cons46wayViewalign.align.tupBel1 0 cons46wayViewalign.align.turTru1 0 cons46wayViewalign.align.vicPac1 0 ct_MyBAM_1601 pack ct_UserTrack_3545 pack ctfile_dm3 ../trash/ct/ct_genome_575a_729f00.bed ctfile_hg17 ../trash/ct/ct_genome_422c_bd1e0.bed ctfile_hg19 ../trash/ct/ct_genome_76fd_8918f0.bed cytoBandIdeo hide db hg19 dgv dense dinkL 2.0 dinkR 2.0 dragSelection 1 dukeDnaseSuper hide encodeAffyChipSuper hide encodeAffyRnaSuper hide encodeEgaspSuper hide encodeGencodeSuper hide encodeSangerChipSuper hide encodeStanfordChipSuper hide encodeUcDavisChipSuper hide encodeUcsdChipSuper hide encodeUppsalaChipSuper hide encodeUtexChipSuper hide encodeUvaDnaRepSuper hide encodeUwDnaseSuper hide encodeYaleChipSuper hide encodeYaleRnaSuper hide fbDownBases 200 fbExonBases 0 fbIntronBases 0 fbQual upstreamAll fbUpBases 1 getDnaPos chr3:41,275,027-41,275,128 hapmapSnps dense hgFind.matches CG6667-RB, hgS_loadUrlName hgS_newSessionName 19Samples hgS_newSessionShare 1 hgS_otherUserName Zkalender hgS_otherUserSessionName 19Samples hgS_saveLocalFileCompress none hgS_saveLocalFileName ngs1-session hgSeq.casing exon hgSeq.cdsExon 1 hgSeq.downstream 0 hgSeq.downstreamSize 20 hgSeq.granularity gene hgSeq.intron 1 hgSeq.maskRepeats 0 hgSeq.padding3 0 hgSeq.padding5 0 hgSeq.promoter 0 hgSeq.promoterSize 20 hgSeq.repMasking lower hgSeq.splitCDSUTR 0 hgSeq.utrExon3 0 hgSeq.utrExon5 0 hgTracksConfigPage notSet hgg_chrom chr2L hgg_end 6546972 hgg_gene CG9554-RB hgg_prot Q3LRW1 hgg_start 6527448 hgg_type flyBaseGene hglft_dataFile__filename hglft_genome_5099_314d20.bed.txt hglft_dataFormat BED hglft_doRefreshOnly 0 hglft_fromDb dm2 hglft_fromOrg D. melanogaster hglft_fudgeThick 0 hglft_minBlocks 1 hglft_minMatch 0.95 hglft_minSizeQ 0 hglft_minSizeT 0 hglft_multiple 0 hglft_toDb dm3 hglft_toOrg D. melanogaster hgsid 189886321 hgt.cutters NlaIII hgt_doJsCommand hgta_compressType none hgta_ctDesc table browser query on flyBaseGene hgta_ctName tb_flyBaseGene hgta_ctUrl hgta_ctVis pack hgta_database dm3 hgta_geneSeqType genomic hgta_group user hgta_nextIntersectGroup rna hgta_nextIntersectOp none hgta_nextIntersectTable all_mrna hgta_nextIntersectTrack mrna hgta_nextInvertTable 0 hgta_nextInvertTable2 0 hgta_nextLessThreshold 80 hgta_nextMoreThreshold 80 hgta_outFileName genes.bed hgta_outputType bed hgta_printCustomTrackHeaders 0 hgta_regionType genome hgta_table flyBaseGene hgta_track flyBaseGene hgtgroup_compGeno_close 0 hgtgroup_denisova_close 0 hgtgroup_encodeChip_close 1 hgtgroup_encodeChrom_close 1 hgtgroup_encodeCompAndVar_close 1 hgtgroup_encodeCompGeno_close 1 hgtgroup_encodeGenes_close 1 hgtgroup_encodeTxLevels_close 1 hgtgroup_encodeVariation_close 1 hgtgroup_expression_close 0 hgtgroup_genes_close 0 hgtgroup_map_close 0 hgtgroup_neandertal_close 0 hgtgroup_phenDis_close 1 hgtgroup_regulation_close 0 hgtgroup_rna_close 0 hgtgroup_user_close 0 hgtgroup_varRep_close 0 insideX 118 intronEst hide jsh_pageVertPos 0 knownGene.label.gene 1 l 1257030 laminB1 hide laminB1Lads hide laminB1Super hide lastPosition chr17:7571720-7590863 mrna hide multishad.hgta_fil.v.hg19.refGene.cdsEndStat.pat 0 multishad.hgta_fil.v.hg19.refGene.cdsStartStat.pat 0 multishad.snp131.include_class 0 multishad.snp131.include_func 0 multishad.snp131.include_molType 0 multishad.snp131.include_valid 0 multishad.snp131_geneTrack 0 multiz15way.mafChain 1 multiz15way.speciesOrder droSim1 droSec1 droYak2 droEre2 droAna3 dp4 droPer1 droWil1 droVir3 droMoj3 droGri2 anoGam1 apiMel3 triCas2 multiz17way.bosTau2 0 multiz17way.danRer3 0 multiz17way.echTel1 0 multiz17way.fr1 0 multiz17way.mafChain 1 multiz17way.panTro1 0 multiz17way.rheMac2 0 multiz17way.speciesOrder mm7 rn3 oryCun1 canFam2 dasNov1 loxAfr1 monDom2 galGal2 xenTro1 tetNig1 multiz30way.speciesOrder rn4 hg18 ponAbe2 canFam2 equCab1 monDom4 galGal3 gasAcu1 multiz44way.speciesOrder rheMac2 mm9 canFam2 loxAfr2 monDom4 ornAna1 galGal3 anoCar1 xenTro2 gasAcu1 multiz46way.speciesOrder rheMac2 mm9 canFam2 loxAfr3 monDom5 galGal3 xenTro2 danRer6 multiz6way.mafChain 1 multiz6way.speciesOrder caeRem3 cb3 caePb2 caeJap1 priPac1 mzDy1Dp2Ag1_phast.mafChain 1 mzDy1Dp2Ag1_phast.speciesOrder droYak1 dp2 anoGam1 near.col.HInv.vis 0 near.col.U133Plus2Id.vis 0 near.col.acc.vis 0 near.col.allenBrainAtlas.vis 0 near.col.bitScore.vis 0 near.col.cdsScore.vis 0 near.col.description.vis 1 near.col.eVal.vis 1 near.col.ensembl.vis 0 near.col.entrezGene.vis 0 near.col.exonCount.vis 0 near.col.expId.vis 0 near.col.flyOrthologs.vis 0 near.col.foldUtr3.vis 0 near.col.foldUtr5.vis 0 near.col.genbank.vis 0 near.col.geneCategory.vis 0 near.col.gnfAtlas2Distance.vis 0 near.col.gnfAtlas2Max.vis 0 near.col.gnfHumanAtlas2.emd selected near.col.gnfHumanAtlas2.ratioAbs ratio near.col.gnfHumanAtlas2.scale 1.0 near.col.gnfHumanAtlas2.vis 1 near.col.gnfHumanAtlas2Id.vis 0 near.col.gnfU95.emd selected near.col.gnfU95.ratioAbs ratio near.col.gnfU95.scale 1.0 near.col.gnfU95.vis 0 near.col.gnfU95Max.vis 0 near.col.go.vis 0 near.col.hprdP2p.vis 0 near.col.intronSize.vis 0 near.col.intronSize.whichIntron max near.col.kegg.vis 0 near.col.knownPos.vis 1 near.col.mouseOrthologs.vis 0 near.col.name.vis 1 near.col.num.vis 1 near.col.pdb.vis 0 near.col.percentId.vis 0 near.col.pfamDomains.vis 0 near.col.proteinAcc.vis 0 near.col.proteinName.vis 0 near.col.ratOrthologs.vis 0 near.col.refSeq.vis 0 near.col.superfamily.vis 0 near.col.u95Id.vis 0 near.col.vidalP2p.vis 0 near.col.visigene.vis 1 near.col.wankerP2p.vis 0 near.col.wormOrthologs.vis 0 near.col.yeastOrthologs.vis 0 near.col.zebrafishOrthologs.vis 0 near.expRatioColors red high/green low near.showAllSplice 0 near_colUserSet_name d near_colUserSet_named_d near.col.pfamDomains.vis="0" near.col.gnfAtlas2Max.vis="0" near.col.name.vis="1" near.col.foldUtr3.vis="0" near.col.mouseOrthologs.vis="0" near.col.knownPos.vis="1" near.col.gnfHumanAtlas2.emd="selected" near.col.percentId.vis="0" near.col.bitScore.vis="0" near.col.proteinAcc.vis="0" near.col.gnfHumanAtlas2Id.vis="0" near.col.intronSize.whichIntron="max" near.col.geneCategory.vis="0" near.col.wormOrthologs.vis="0" near.col.gnfU95.vis="0" near.col.description.vis="1" near.col.yeastOrthologs.vis="0" near.col.gnfU95Max.vis="0" near.col.proteinName.vis="0" near.col.cdsScore.vis="0" near.col.gnfHumanAtlas2.scale="1.0" near.col.zebrafishOrthologs.vis="0" near.col.visigene.vis="1" near.col.u95Id.vis="0" near.col.expId.vis="0" near.col.superfamily.vis="0" near.col.ensembl.vis="0" near.col.gnfU95.scale="1.0" near.col.num.vis="1" near.col.hprdP2p.vis="0" near.col.refSeq.vis="0" near.col.eVal.vis="1" near.col.kegg.vis="0" near.col.gnfHumanAtlas2.ratioAbs="ratio" near.col.gnfU95.emd="selected" near.col.HInv.vis="0" near.col.vidalP2p.vis="0" near.col.pdb.vis="0" near.col.U133Plus2Id.vis="0" near.col.acc.vis="0" near.col.genbank.vis="0" near.col.ratOrthologs.vis="0" near.col.gnfHumanAtlas2.vis="1" near.col.go.vis="0" near.col.exonCount.vis="0" near.col.entrezGene.vis="0" near.col.allenBrainAtlas.vis="0" near.col.wankerP2p.vis="0" near.col.flyOrthologs.vis="0" near.col.gnfU95.ratioAbs="ratio" near.col.foldUtr5.vis="0" near.col.intronSize.vis="0" near.col.gnfAtlas2Distance.vis="0" near_count 25 near_order expGnfAtlas2 newWinWidth 362 o flyBaseGene oreganno dense org Human output hyperlink pgSnp dense phastConsElements15way dense pix 800 position chr17:7579147-7579708 r 1258118 refGene hide refGene.label.gene 1 revCmplDisp 0 rmsk hide ruler dense rulerClickHeight 22 sendToGalaxy 0 sendToGreat 0 seqFile__filename snp125AvHetCutoff 0 snp125ColorSource Function snp125ExtendedNames 0 snp125FuncIntron black snp125FuncLocus black snp125FuncNonSynon red snp125FuncSplice red snp125FuncSynon green snp125FuncUnknown black snp125FuncUntranslated blue snp125WeightCutoff 1 snp129 dense snp131.include_class unknown snp131.include_class single snp131.include_class in-del snp131.include_class heterozygous snp131.include_class microsatellite snp131.include_class named snp131.include_class no variation snp131.include_class mixed snp131.include_class mnp snp131.include_class insertion snp131.include_class deletion snp131.include_func coding-nonsynon snp131.include_molType unknown snp131.include_molType genomic snp131.include_molType cDNA snp131.include_valid unknown snp131.include_valid by-cluster snp131.include_valid by-frequency snp131.include_valid by-submitter snp131.include_valid by-2hit-2allele snp131.include_valid by-hapmap snp131.include_valid by-1000genomes snp131.section_colorByAttribute_close 1 snp131.section_filterByAttribute_close 0 snp131.section_geneTracks_close 1 snp131_geneTrack knownGene snpArray dense sort query,score switchDbTss.scoreFilter 10 t 10319065 table flyBaseGene targetScanS dense transMap hide transMapAlnMRna hide transMapAlnRefSeq hide transMapAlnUcscGenes hide uppsalaChipSuper hide uwNucOcc hide wgEncodeDNAseSuper hide wgEncodeDnaMethylSuper hide wgEncodeHaibMethylRrbs hide wgEncodeHistoneSuper hide wgEncodeRbpSuper hide wgEncodeReg show wgEncodeRnaSeqSuper hide wgEncodeTfBindingSuper hide wgEncodeUcsdNgTaf1Super hide wgEncodeUwDgf hide wgEncodeUwDnase hide winEnd 1258118 winStart 1257030 wp_flipReverse 0 wp_good 15 wp_perfect 15 wp_size 40000 wp_target genome